Undergraduate Teaching 2025-26

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Engineering Tripos Part IIB, 4D14: Contaminated Land & Waste Containment, 2022-23

Module Leader

Prof A Al-Tabbaa

Lecturers

Prof A Al-Tabbaa and Prof G Madabhushi

Lab Leader

Prof A Al-Tabbaa

Timing and Structure

Michaelmas term. 14 lectures + 1 examples classes + 1 invited lecture + coursework. Assessment: 75% exam/25% coursework.

Aims

The aims of the course are to:

  • provide an in-depth look at aspects of contaminated land and waste containment including sources of contamination, characterisation of waste, assessment, containment, remediation and sustainable regeneration.

Objectives

As specific objectives, by the end of the course students should be able to:

  • develop an appreciation of current and future problems and legislations related to contaminated land and waste containment;
  • develop good understand of contaminated land remediation options and selection decisions.
  • develop an understanding of decision support tools for contaminated land management.
  • identify potentially hazardous chemicals and sources of contamination.
  • appreciate the crucial stages in dealing with and managing contaminated land.
  • assess the risk of pollution hazards from buried wastes.
  • appreciate the legal, technical and health constraints on the design of waste repositories.
  • discuss the design of appropriate containment facilities.

Content

The module starts with an overview of contaminated land and waste containment and a review of contaminants in the ground and methods of groundwater analysis. This is followed by l ectures on disposal of waste in the ground to develop an understanding of the safe design of landfill sites for disposal of waste materials. Finally the module looks at contaminated land remendiation, management and aspects of sustainable regeneration

Introduction to contaminated land and waste containment (1L, Prof A Al-Tabbaa)

  • Introduction and overview of contaminated land remediation and waste and its containment;
  • Introduction to relevant legislation

Disposal of waste in the ground (5L, Prof G Madabhushi; 1 example class)

  • Characterisation of waste materials;
  • Estimation of landfill size, cost of waste disposal, Landfill Tax
  • Design of barriers: grout curtain, slurry wall, geomembranes;
  • Constructed facilities: design of landfill and hazardous waste repositories

Contaminants and analysis in soil and water (2L, Dr R J Lynch)

  • Contamination in the environment, introduction of inorganic and organic contaminants, and their analysis;
  • Demonstration of pollutant analysis in soils and water

Contaminated land remediation and regeneration (6L, Prof A Al-Tabbaa, 1L Guest Speaker)

  • Land contamination and remediation, sources and solutions including case studies;
  • Sustainable remediation of contaminated land;
  • Decision support tools including cost-benefit analysis, life cycle assessment and multi-criteria analysis;
  • Sustainable brownfield land management and regeneration

Coursework

Cost-benefit analysis of remediation techniques at a contaminated site.

Coursework Format

Due date

& marks

Qualitative appraisal for the remediation of a contaminated site

The coursework will involve carrying a qualitative appraisal, using the Environment Agency 'Cost-benefit analysis for remediation of land contamination' document, comparing six remediation techniques on a real contaminated site. Extracts from the site investigation report will be provided and the site is to be redeveloped for industrial use.

Learning objectives:

  • Develop a good understand of contaminated land remediation selection decisions
  • Develop an appreciation of the factors influencing such decisions
  • Develop an appreciation of impact of sensitivity analyses on the decision outcome
  • Develop a good practice for writing a professional report

Individual Report

anonymously marked

by noon on Friday 9 December 2022

[15/60]

 

 

 

 

Booklists

Please refer to the Booklist for Part IIB Courses for references to this module, this can be found on the associated Moodle course.

Examination Guidelines

Please refer to Form & conduct of the examinations.

UK-SPEC

This syllabus contributes to the following areas of the UK-SPEC standard:

Toggle display of UK-SPEC areas.

GT1

Develop transferable skills that will be of value in a wide range of situations. These are exemplified by the Qualifications and Curriculum Authority Higher Level Key Skills and include problem solving, communication, and working with others, as well as the effective use of general IT facilities and information retrieval skills. They also include planning self-learning and improving performance, as the foundation for lifelong learning/CPD.

IA1

Apply appropriate quantitative science and engineering tools to the analysis of problems.

IA2

Demonstrate creative and innovative ability in the synthesis of solutions and in formulating designs.

KU1

Demonstrate knowledge and understanding of essential facts, concepts, theories and principles of their engineering discipline, and its underpinning science and mathematics.

KU2

Have an appreciation of the wider multidisciplinary engineering context and its underlying principles.

D1

Wide knowledge and comprehensive understanding of design processes and methodologies and the ability to apply and adapt them in unfamiliar situations.

D3

Identify and manage cost drivers.

D6

Manage the design process and evaluate outcomes.

S1

The ability to make general evaluations of commercial risks through some understanding of the basis of such risks.

S3

Understanding of the requirement for engineering activities to promote sustainable development.

S4

Awareness of the framework of relevant legal requirements governing engineering activities, including personnel, health, safety, and risk (including environmental risk) issues.

E1

Ability to use fundamental knowledge to investigate new and emerging technologies.

E2

Ability to extract data pertinent to an unfamiliar problem, and apply its solution using computer based engineering tools when appropriate.

E3

Ability to apply mathematical and computer based models for solving problems in engineering, and the ability to assess the limitations of particular cases.

P1

A thorough understanding of current practice and its limitations and some appreciation of likely new developments.

P3

Understanding of contexts in which engineering knowledge can be applied (e.g. operations and management, technology, development, etc).

US1

A comprehensive understanding of the scientific principles of own specialisation and related disciplines.

US4

An awareness of developing technologies related to own specialisation.

 
Last modified: 26/08/2022 18:19

Engineering Tripos Part IIB, 4M28: Chinese for advanced and heritage speakers, 2022-23

Module Leader

Dr F Morgan

Lecturer

Dr F Morgan

Timing and Structure

Michaelmas term. 16 Lectures. Assessment: 100% coursework.

Prerequisites

• Near native or advanced level of listening and speaking skills • Be able to read authentic materials in Chinese (using relevant translation tools as appropriate) • Be able to write Chinese characters though the level of competency in this area may not be as high as listening, speaking and reading

Objectives

As specific objectives, by the end of the course students should be able to:

  • • To develop and maintain Chinese language competence in all four skills areas and be able to engage in tasks on topics related to science and technology.
  • • To explore different genres of writing and develop a more nuanced understanding on the history and culture of the Chinese speaking world.
  • • To understand the concept of reflexivity and put it into practice by developing the ability to reflect on their own position and process.
  • • To develop sensitivity to others’ position and process.
  • • To develop awareness of the relational dynamic in a group and their own input.

Content

This course is aimed at heritage and advanced speakers of Chinese who have an advanced or near native level of language competence.  The curriculum aims to fulfil two purposes.  One is to continue improving language proficiency and cultural knowledge by introducing authentic texts that cover a variety of topics and genres; the other is to introduce the concepts of reflexivity and subjectivity during the language learning process.    The aim is to enable learners to develop an awareness of themselves and others hence building the capability to work with differences.

Apart from the study of language items, experiential exercises are introduced to encourage the learners to explore the impact of each topic area on themselves. This is followed by a reflective journal after each session.

 

 

Booklists

Please refer to the Booklist for Part IIB Courses for references to this module, this can be found on the associated Moodle course.

Examination Guidelines

Please refer to Form & conduct of the examinations.

 
Last modified: 19/05/2022 08:44

Engineering Tripos Part IIB, 4G7: Control and computation in living systems, 2025-26

Leader

Timothy O'Leary

Second Assessor

Fulvio Forni

Timing and Structure

Michaelmas term, 12 Lectures + problems classes. 100% Exam

Prerequisites

Ability to program numerical simulations in MATLAB or Python. No formal prerequisites but 3G2 Mathematical Physiology and 3G3 Intro to Neuroscience would be very useful.

Aims

The aims of the course are to:

  • Introduce students to formalisms for modelling biological systems at multiple levels, from molecules to organisms
  • Provide tools for understanding how nonlinear computations arise in biological systems to enable decision making, timing, memory and control
  • Develop an appreciation of current research in quantitative biology through case studies of recent and/or classic research papers

Objectives

As specific objectives, by the end of the course students should be able to:

  • Introduce examples of biological computation and control: bacterial chemotaxis, circadian oscillators, motor pattern generators, biochemical
  • Construct and analyse formal models of living systems, including biochemical networks, neural networks and populations of agents
  • Provide a contextual introduction to key mathematical and computational tools: (nonlinear) feedback control, qualitative theory of ODEs, singular perturbation theory, stochastic dynamical systems, simulation methods.
  • Develop ability to simulate and experiment with models of living systems and report results coherently and critically
  • Develop ability to read, understand and appreciate/contextualise research papers in quantitative biology and mathematical biology

Content

Living systems, including single cells, nervous systems and animal/human populations, are increasingly well understood in terms of the computations they perform and the control principles they embody. This has enabled a paradigm shift in bioengineering, allowing us to pick apart and understand how living systems function and, crucially, manipulate and exploit these functions in a principled way.

 

This course will introduce students to current research in this field and provide tools and examples for analysing, modelling and designing biological and biologically-inspired systems. It therefore fills an important component of an up to date bioengineering curriculum and complements several courses on offer in Bioengineering (4G1 Mathematical Biology of the Cell, 4G3 Computational Neuroscience) and Information Engineering (4F2 Nonlinear and Robust Control, 4M7 Practical Optimization). It will naturally complement projects and modules in bioengineering and neuroscience.

Course content (individual lectures may vary)

  1. Introduction to modelling formalisms with examples (mass action kinetics, agent/population dynamics, timescale separation)
  2. Switches and hysteresis: the fundamental motif for decision making and memory
  3. Introduction to phase plane analysis and qualitative theory of ODEs
  4. Gradient following algorithms in nature, chemotaxis
  5. From switches to pulses and nonlinear oscillations: the Fitzhugh Nagumo reduction of action potentials
  6. Consensus and decision making in populations of cells and animals
  7. Selected topics in biological control and computation and bio-inspired computation (e.g. brain machine interfaces, synthetic biochemical circuits, neuromorphic computing)

Coursework

Optional (unassessed) coding exercises, assigned reading.

Booklists

The following textbooks are useful

Strogatz, S. H. (2018). Nonlinear dynamics and chaos: with applications to physics, biology, chemistry, and engineering. CRC press.

Berg, H. C. (2008). E. coli in Motion. Springer Science & Business Media.

Alon, U. (2006). An introduction to systems biology: design principles of biological circuits. Chapman and Hall/CRC.

 

Examination Guidelines

Please refer to Form & conduct of the examinations.

 
Last modified: 17/06/2025 14:38

Engineering Tripos Part IIB, 4G7: Control and computation in living systems, 2024-25

Leader

Timothy O'Leary

Second Assessor

Fulvio Forni

Timing and Structure

Michaelmas term, 12 Lectures + problems classes. Final exam plus coding exercise.

Prerequisites

Ability to program numerical simulations in MATLAB or Python. No formal prerequisites but 3G2 Mathematical Physiology and 3G3 Intro to Neuroscience would be very useful.

Aims

The aims of the course are to:

  • Introduce students to formalisms for modelling biological systems at multiple levels, from molecules to organisms
  • Provide tools for understanding how nonlinear computations arise in biological systems to enable decision making, timing, memory and control
  • Develop an appreciation of current research in quantitative biology through case studies of recent and/or classic research papers

Objectives

As specific objectives, by the end of the course students should be able to:

  • Introduce examples of biological computation and control: bacterial chemotaxis, circadian oscillators, motor pattern generators, biochemical
  • Construct and analyse formal models of living systems, including biochemical networks, neural networks and populations of agents
  • Provide a contextual introduction to key mathematical and computational tools: (nonlinear) feedback control, qualitative theory of ODEs, singular perturbation theory, stochastic dynamical systems, simulation methods.
  • Develop ability to simulate and experiment with models of living systems and report results coherently and critically
  • Develop ability to read, understand and appreciate/contextualise research papers in quantitative biology and mathematical biology

Content

Living systems, including single cells, nervous systems and animal/human populations, are increasingly well understood in terms of the computations they perform and the control principles they embody. This has enabled a paradigm shift in bioengineering, allowing us to pick apart and understand how living systems function and, crucially, manipulate and exploit these functions in a principled way.

 

This course will introduce students to current research in this field and provide tools and examples for analysing, modelling and designing biological and biologically-inspired systems. It therefore fills an important component of an up to date bioengineering curriculum and complements several courses on offer in Bioengineering (4G1 Mathematical Biology of the Cell, 4G3 Computational Neuroscience) and Information Engineering (4F2 Nonlinear and Robust Control, 4M7 Practical Optimization). It will naturally complement projects and modules in bioengineering and neuroscience.

Course content (individual lectures may vary)

  1. Introduction to modelling formalisms with examples (mass action kinetics, agent/population dynamics, timescale separation)
  2. Switches and hysteresis: the fundamental motif for decision making and memory
  3. Introduction to phase plane analysis and qualitative theory of ODEs
  4. Gradient following algorithms in nature, chemotaxis
  5. From switches to pulses and nonlinear oscillations: the Fitzhugh Nagumo reduction of action potentials
  6. Consensus and decision making in populations of cells and animals
  7. Selected topics in biological control and computation and bio-inspired computation (e.g. brain machine interfaces, synthetic biochemical circuits, neuromorphic computing)

Coursework

Coding/simulation exercises with a short report (25%)

Booklists

The following textbooks are useful

Strogatz, S. H. (2018). Nonlinear dynamics and chaos: with applications to physics, biology, chemistry, and engineering. CRC press.

Berg, H. C. (2008). E. coli in Motion. Springer Science & Business Media.

Alon, U. (2006). An introduction to systems biology: design principles of biological circuits. Chapman and Hall/CRC.

 

Examination Guidelines

Please refer to Form & conduct of the examinations.

 
Last modified: 31/05/2024 10:09

Engineering Tripos Part IIB, 4G7: Control and computation in living systems, 2023-24

Leader

Timothy O'Leary

Second Assessor

Fulvio Forni

Timing and Structure

Michaelmas term, 12 Lectures + problems classes. Final exam plus coding exercise.

Prerequisites

Ability to program numerical simulations in MATLAB or Python. No formal prerequisites but 3G2 Mathematical Physiology and 3G3 Intro to Neuroscience would be very useful.

Aims

The aims of the course are to:

  • Introduce students to formalisms for modelling biological systems at multiple levels, from molecules to organisms
  • Provide tools for understanding how nonlinear computations arise in biological systems to enable decision making, timing, memory and control
  • Develop an appreciation of current research in quantitative biology through case studies of recent and/or classic research papers

Objectives

As specific objectives, by the end of the course students should be able to:

  • Introduce examples of biological computation and control: bacterial chemotaxis, circadian oscillators, motor pattern generators, biochemical
  • Construct and analyse formal models of living systems, including biochemical networks, neural networks and populations of agents
  • Provide a contextual introduction to key mathematical and computational tools: (nonlinear) feedback control, qualitative theory of ODEs, singular perturbation theory, stochastic dynamical systems, simulation methods.
  • Develop ability to simulate and experiment with models of living systems and report results coherently and critically
  • Develop ability to read, understand and appreciate/contextualise research papers in quantitative biology and mathematical biology

Content

Living systems, including single cells, nervous systems and animal/human populations, are increasingly well understood in terms of the computations they perform and the control principles they embody. This has enabled a paradigm shift in bioengineering, allowing us to pick apart and understand how living systems function and, crucially, manipulate and exploit these functions in a principled way.

 

This course will introduce students to current research in this field and provide tools and examples for analysing, modelling and designing biological and biologically-inspired systems. It therefore fills an important component of an up to date bioengineering curriculum and complements several courses on offer in Bioengineering (4G1 Mathematical Biology of the Cell, 4G3 Computational Neuroscience) and Information Engineering (4F2 Nonlinear and Robust Control, 4M7 Practical Optimization). It will naturally complement projects and modules in bioengineering and neuroscience.

Course content (individual lectures may vary)

  1. Introduction to modelling formalisms with examples (mass action kinetics, agent/population dynamics, timescale separation)
  2. Switches and hysteresis: the fundamental motif for decision making and memory
  3. Introduction to phase plane analysis and qualitative theory of ODEs
  4. Gradient following algorithms in nature, chemotaxis
  5. From switches to pulses and nonlinear oscillations: the Fitzhugh Nagumo reduction of action potentials
  6. Consensus and decision making in populations of cells and animals
  7. Selected topics in biological control and computation and bio-inspired computation (e.g. brain machine interfaces, synthetic biochemical circuits, neuromorphic computing)

Coursework

Coding/simulation exercises with a short report (25%)

Booklists

The following textbooks are useful

Strogatz, S. H. (2018). Nonlinear dynamics and chaos: with applications to physics, biology, chemistry, and engineering. CRC press.

Berg, H. C. (2008). E. coli in Motion. Springer Science & Business Media.

Alon, U. (2006). An introduction to systems biology: design principles of biological circuits. Chapman and Hall/CRC.

 

Examination Guidelines

Please refer to Form & conduct of the examinations.

 
Last modified: 30/05/2023 15:32

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